DOG 2.0 - Protein Domain Structure Visualization
Feb 26, 2014 · In this work, we present a novel software of DOG (Domain Graph, version 1.0) for experimentalists, to prepare publication-quality figures of protein domain structures. The scale of a protein domain and the position of a functional motif/site will be precisely calculated.
a-r-j/graphein: Protein Graph Library - GitHub
Protein & Interactomic Graph Library. This package provides functionality for producing geometric representations of protein and RNA structures, and biological interaction networks. We provide compatibility with standard PyData formats, as well as graph objects designed for ease of use with popular deep learning libraries.
IBS: Illustrator for Biological Sequences
Jan 1, 2025 · In this work, we present a new tool called Illustrator for Biological Sequences (IBS) for assisting experimentalists in drawing publication-quality diagrams of both protein and nucleotide sequences. With a dual-mode user interface, experimentalists are allowed to produce their own schematic diagrams for either protein or nucleotide sequences in ...
Protter - interactive protein feature visualization - ETH Z
enter a list of proteins load a proteomics result file. enter a custom protein sequence or multiple sequences in FASTA format: submit load example load FASTA file. transmembrane topology: no membrane automatic custom. N-terminus location: extracellular intracellular use UniProt use Phobius. transmembrane regions: intramembrane regions:
DOG 2.0 - Protein Domain Structure Visualization
Feb 26, 2014 · DOG (Domain Illustrator) HemI (Heatmap Illustrator) WocEA (Enrichment Analysis) DeepPhagy (Autophagy images) Databases. MiCroKiTS (Cell Cycle ) CGDB (Circadian ) DrLLPS (Phase Separation ) iEKPD (PK, PP & PPBD) iUUCD (Ubiquitin Regulators ) WERAM (Me. & Ace. Regulator) EPSD (Eukaryotic Phospho ) dbPSP (Prokaryotic Phospho ) CPLM …
Illustrator教程之蛋白质结构域示意图绘制软件 —— DOG 1.0
In this work, we present a novel software of DOG (Domain Graph, version 1.0) for experimentalists, to prepare publication-quality figures of protein domain structures. The scale of a protein domain and the position of a functional motif/site will be precisely calculated.
DOG 1.0: illustrator of protein domain structures | Cell Research
Jan 20, 2009 · Schematic diagram of protein domain structures with functional motifs/sites in a concise and illustrative drawing is greatly helpful for a broad readership to grasp the old and novel functions of...
user-designated protein domain structures will be a great help for biological experimentalists to communicate their research results. In this work, we present a novel software of DOG (Domain Graph, version 1.0) for experimentalists, to pre-pare publication-quality figures of …
DOG 2.0 - Protein Domain Structure Visualization
Feb 26, 2014 · Thus, diagram of protein domain/motif structures in an attractive, concise and precise manner is greatly helpful for a broad readership to grasp the old and novel functions of proteins rapidly.
Protein domain organisation: adding order - BMC Bioinformatics
Jan 29, 2009 · We describe a directed domain graph that takes into account the sequential order of domains. To begin, we evaluate the global properties of the directed networks and compare them with random and previously studied examples. We then assess the domain graphs for individual genomes and phylogenetic groups.